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Dutch Connectome Lab
Installation
Download
Installation executable
Installation MATLAB Toolbox
Installation additional software
Getting started
How to use CATO
Docker
Running a subject again
Parameters
Examples
Structural processing example
Functional processing example
BIDS formatted data
fMRI preprocessing with Melodic + Fix
Cortical reconstruction with FreeSurfer
Structural pipeline
Structural preprocessing
Anatomical steps
Reconstruction diffusion
Reconstruction fibers
Reconstruction fiber properties
Network reconstruction
Functional pipeline
Preprocessing
Anatomical steps
Compute motion metrics
Network reconstruction
Structural configuration
general step
structural_preprocessing step
parcellation step
collect_region_properties step
reconstruction_diffusion step
reconstruction_fibers step
reconstruction_fiber_properties step
reconstruction_network step
Functional configuration
general step
functional_preprocessing step
parcellation step
collect_region_properties step
compute_motion_metrics step
reconstruction_functional_network step
Configuration Assistant
References
Citing CATO
Bibliography
Configuration Assistant
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